Index _ | A | B | C | D | E | F | G | I | K | L | M | N | O | P | Q | R | S | T | U | V | W | Z _ __call__() (cbclib.bin.FFTW method) A add_attribute() (cbclib.CXIProtocol method) ang_th (cbclib.bin.LSD attribute) axes (cbclib.bin.FFTW attribute) B backward_points() (cbclib.ComposeTransforms method) (cbclib.Crop method) (cbclib.CrystData method) (cbclib.Downscale method) (cbclib.Mirror method) Basis (class in cbclib) binterpolate() (in module cbclib.bin) blur_pupil() (cbclib.CrystData method) byte_align() (in module cbclib.bin) C C (in module cbclib.data_processing) calc_source_lines() (in module cbclib.bin) cartesian_to_spherical() (in module cbclib.bin) cast() (cbclib.CXIProtocol method) cbclib.cxi_protocol module CBCTable (class in cbclib) CBDModel (class in cbclib) ce_criterion() (in module cbclib.bin) clear() (cbclib.CrystData method) clip() (cbclib.FourierIndexer method) (cbclib.Map3D method) close() (cbclib.CXIStore method) ComposeTransforms (class in cbclib) contents() (cbclib.Basis method) (cbclib.ComposeTransforms method) (cbclib.Crop method) (cbclib.CrystData method) (cbclib.CXIProtocol method) (cbclib.Downscale method) (cbclib.IntensityScaler method) (cbclib.LogContainer method) (cbclib.LogProtocol method) (cbclib.LSDetector method) (cbclib.Mirror method) (cbclib.ModelDetector method) (cbclib.Rotation method) (cbclib.ScanSetup method) (cbclib.Streaks method) (cbclib.Transform method) count_outliers() (cbclib.ModelDetector method) Crop (class in cbclib) CrystData (class in cbclib) CXIProtocol (class in cbclib) CXIStore (class in cbclib) D D (in module cbclib.data_container) (in module cbclib.data_processing) detect() (cbclib.bin.LSD method) (cbclib.LSDetector method) (cbclib.ModelDetector method) detector_to_kin() (cbclib.ScanSetup method) detector_to_kout() (cbclib.Sample method) (cbclib.ScanSamples method) (cbclib.ScanSetup method) direction (cbclib.bin.FFTW attribute) Downscale (class in cbclib) draw() (cbclib.LSDetector method) (cbclib.ModelDetector method) draw_line_image() (in module cbclib.bin) draw_line_mask() (in module cbclib.bin) draw_line_table() (in module cbclib.bin) drop_duplicates() (cbclib.CBCTable method) E empty_aligned() (in module cbclib.bin) euler_angles() (in module cbclib.bin) euler_matrix() (in module cbclib.bin) execute() (cbclib.bin.FFTW method) export_sfac() (cbclib.IntensityScaler method) export_streaks() (cbclib.LSDetector method) (cbclib.ModelDetector method) export_table() (cbclib.LSDetector method) (cbclib.ModelDetector method) F fft() (cbclib.FourierIndexer method) (cbclib.Map3D method) fft_convolve() (in module cbclib.bin) FFTW (class in cbclib.bin) file (cbclib.CXIStore attribute) file_dict (cbclib.CXIStore attribute) filenames() (cbclib.CXIStore method) files() (cbclib.CXIStore method) filter_direction() (cbclib.FourierIndexer method) filter_hkl() (cbclib.CBDModel method) (cbclib.SampleRefiner method) (cbclib.SetupRefiner method) find_dataset() (cbclib.CXIStore method) find_log_attribute() (cbclib.LogContainer method) find_log_dataset() (cbclib.LogContainer method) find_log_part_key() (cbclib.LogContainer method) find_path() (cbclib.CXIProtocol method) find_peaks() (cbclib.FourierIndexer method) find_rotations() (cbclib.ScanSamples method) fitness() (cbclib.FourierIndexer method) (cbclib.IntensityScaler method) (cbclib.SampleRefiner method) (cbclib.SetupRefiner method) flags (cbclib.bin.FFTW attribute) forward() (cbclib.ComposeTransforms method) (cbclib.Crop method) (cbclib.Downscale method) (cbclib.Mirror method) (cbclib.Transform method) forward_points() (cbclib.ComposeTransforms method) (cbclib.Crop method) (cbclib.CrystData method) (cbclib.Downscale method) (cbclib.Mirror method) fourier_index() (cbclib.CBCTable method) FourierIndexer (class in cbclib) G gain() (cbclib.IntensityScaler method) gaussian_blur() (cbclib.FourierIndexer method) (cbclib.Map3D method) gaussian_filter() (in module cbclib.bin) gaussian_gradient_magnitude() (in module cbclib.bin) generate_basis() (cbclib.SampleRefiner method) (cbclib.SetupRefiner method) generate_bounds() (cbclib.SampleRefiner class method) (cbclib.SetupRefiner class method) generate_hkl() (cbclib.Basis method) generate_kins() (cbclib.CBCTable method) generate_models() (cbclib.SampleRefiner method) (cbclib.SetupRefiner method) generate_patterns() (cbclib.LSDetector method) generate_samples() (cbclib.LogContainer method) (cbclib.SampleRefiner method) (cbclib.SetupRefiner method) generate_setup() (cbclib.SampleRefiner method) (cbclib.SetupRefiner method) generate_streaks() (cbclib.CBDModel method) (cbclib.SampleRefiner method) (cbclib.SetupRefiner method) get() (cbclib.Basis method) (cbclib.ComposeTransforms method) (cbclib.Crop method) (cbclib.CrystData method) (cbclib.CXIProtocol method) (cbclib.Downscale method) (cbclib.IntensityScaler method) (cbclib.LogContainer method) (cbclib.LogProtocol method) (cbclib.LSDetector method) (cbclib.Mirror method) (cbclib.ModelDetector method) (cbclib.Rotation method) (cbclib.ScanSetup method) (cbclib.Streaks method) (cbclib.Transform method) get_bounds() (cbclib.SampleRefiner method) (cbclib.SetupRefiner method) get_coordinates() (cbclib.FourierIndexer method) (cbclib.Map3D method) get_crop() (cbclib.CBCTable method) get_dtype() (cbclib.CXIProtocol method) get_frames() (cbclib.CBCTable method) get_kind() (cbclib.CXIProtocol method) get_load_paths() (cbclib.CXIProtocol method) get_ndim() (cbclib.CXIProtocol method) get_pca() (cbclib.CrystData method) I I (in module cbclib.data_container) import_csv() (cbclib.CBCTable class method) import_dataframe() (cbclib.Sample class method) (cbclib.ScanSamples class method) import_default() (cbclib.CXIProtocol class method) (cbclib.LogProtocol class method) import_euler() (cbclib.Rotation class method) import_hdf() (cbclib.CBCTable class method) (cbclib.FourierIndexer class method) (cbclib.Map3D class method) import_ini() (cbclib.Basis class method) (cbclib.CXIProtocol class method) (cbclib.LogProtocol class method) (cbclib.ScanSetup class method) import_mask() (cbclib.CrystData method) import_matrix() (cbclib.Basis class method) import_patterns() (cbclib.CrystData method) import_spherical() (cbclib.Basis class method) import_tilt() (cbclib.Rotation class method) import_whitefield() (cbclib.CrystData method) index_array() (cbclib.ComposeTransforms method) (cbclib.Crop method) (cbclib.Downscale method) (cbclib.Mirror method) indices() (cbclib.CXIStore method) init_estimate() (cbclib.IntensityScaler method) input_array (cbclib.bin.FFTW attribute) IntensityScaler (class in cbclib) interpolate() (cbclib.FourierIndexer method) (cbclib.Map3D method) is_byte_aligned() (in module cbclib.bin) is_compatible() (cbclib.FourierIndexer method) (cbclib.Map3D method) items() (cbclib.Basis method) (cbclib.ComposeTransforms method) (cbclib.Crop method) (cbclib.CrystData method) (cbclib.CXIProtocol method) (cbclib.CXIStore method) (cbclib.Downscale method) (cbclib.IntensityScaler method) (cbclib.LogContainer method) (cbclib.LogProtocol method) (cbclib.LSDetector method) (cbclib.Mirror method) (cbclib.ModelDetector method) (cbclib.Rotation method) (cbclib.ScanSamples method) (cbclib.ScanSetup method) (cbclib.Streaks method) (cbclib.Transform method) K keys() (cbclib.Basis method) (cbclib.ComposeTransforms method) (cbclib.Crop method) (cbclib.CrystData method) (cbclib.CXIProtocol method) (cbclib.CXIStore method) (cbclib.Downscale method) (cbclib.IntensityScaler method) (cbclib.LogContainer method) (cbclib.LogProtocol method) (cbclib.LSDetector method) (cbclib.Mirror method) (cbclib.ModelDetector method) (cbclib.Rotation method) (cbclib.ScanSamples method) (cbclib.ScanSetup method) (cbclib.Streaks method) (cbclib.Transform method) kin_to_detector() (cbclib.ScanSetup method) kin_to_sample() (cbclib.Sample method) (cbclib.ScanSamples method) (cbclib.ScanSetup method) kout_to_detector() (cbclib.Sample method) (cbclib.ScanSamples method) (cbclib.ScanSetup method) kr_grid() (in module cbclib.bin) kr_predict() (in module cbclib.bin) L L (in module cbclib.log_protocol) lattice_constants() (cbclib.Basis method) load() (cbclib.CrystData method) load_attribute() (cbclib.CXIStore method) load_attributes() (cbclib.LogProtocol method) load_data() (cbclib.LogProtocol method) log_eps (cbclib.bin.LSD attribute) LogContainer (class in cbclib) LogProtocol (class in cbclib) ls_criterion() (in module cbclib.bin) LSD (class in cbclib.bin) lsd_detector() (cbclib.CrystData method) LSDetector (class in cbclib) M Map3D (class in cbclib) mask_frames() (cbclib.CrystData method) (cbclib.LSDetector method) (cbclib.ModelDetector method) mask_pupil() (cbclib.CrystData method) mask_region() (cbclib.CrystData method) mask_streaks() (cbclib.Streaks method) maximum_filter() (in module cbclib.bin) median() (in module cbclib.bin) median_filter() (in module cbclib.bin) merge_hkl() (cbclib.IntensityScaler method) merge_sfac() (cbclib.IntensityScaler method) Mirror (class in cbclib) mode (cbclib.CXIStore attribute) model() (cbclib.IntensityScaler method) model_detector() (cbclib.CrystData method) ModelDetector (class in cbclib) module cbclib.cxi_protocol N next_fast_len() (in module cbclib.bin) normalise_pattern() (in module cbclib.bin) normalize_idft (cbclib.bin.FFTW attribute) O ones_aligned() (in module cbclib.bin) open() (cbclib.CXIStore method) ortho (cbclib.bin.FFTW attribute) output_array (cbclib.bin.FFTW attribute) P pattern_dataframe() (cbclib.CBCTable method) (cbclib.CBDModel method) (cbclib.Streaks method) pattern_dict() (cbclib.CBCTable method) (cbclib.Streaks method) pattern_image() (cbclib.CBCTable method) (cbclib.Streaks method) pattern_mask() (cbclib.Streaks method) patterns_dataframe() (cbclib.SampleRefiner method) (cbclib.SetupRefiner method) patterns_image() (cbclib.SampleRefiner method) (cbclib.SetupRefiner method) poisson_criterion() (in module cbclib.bin) project_effs() (in module cbclib.bin) protocol (cbclib.CXIStore attribute) Q quant (cbclib.bin.LSD attribute) R read_attribute_indices() (cbclib.CXIProtocol method) read_attribute_shapes() (cbclib.CXIProtocol method) read_dataset_shapes() (cbclib.CXIProtocol static method) read_logs() (cbclib.LogContainer method) read_shape() (cbclib.CXIStore method) read_translations() (cbclib.LogContainer method) reciprocate() (cbclib.Basis method) (cbclib.Rotation method) reduce_peaks() (cbclib.FourierIndexer method) ReferenceType (class in cbclib.data_container) refine_pattern() (in module cbclib.bin) refine_samples() (cbclib.CBCTable method) refine_setup() (cbclib.CBCTable method) refine_streaks() (cbclib.LSDetector method) (cbclib.ModelDetector method) regularise() (cbclib.ScanSamples method) replace() (cbclib.Basis method) (cbclib.ComposeTransforms method) (cbclib.Crop method) (cbclib.CrystData method) (cbclib.CXIProtocol method) (cbclib.Downscale method) (cbclib.FourierIndexer method) (cbclib.IntensityScaler method) (cbclib.LogContainer method) (cbclib.LogProtocol method) (cbclib.LSDetector method) (cbclib.Map3D method) (cbclib.Mirror method) (cbclib.ModelDetector method) (cbclib.Rotation method) (cbclib.Sample method) (cbclib.ScanSetup method) (cbclib.Streaks method) (cbclib.Transform method) rotate() (cbclib.ScanSamples method) rotate_basis() (cbclib.Sample method) Rotation (class in cbclib) S Sample (class in cbclib) SampleRefiner (class in cbclib) save() (cbclib.CrystData method) save_attribute() (cbclib.CXIStore method) scale (cbclib.bin.LSD attribute) scale() (cbclib.CBCTable method) ScanSamples (class in cbclib) ScanSetup (class in cbclib) SetupRefiner (class in cbclib) sigma_scale (cbclib.bin.LSD attribute) simulate_translations() (cbclib.LogContainer method) spherical_to_cartesian() (in module cbclib.bin) str_to_list() (cbclib.Basis static method) (cbclib.CXIProtocol static method) (cbclib.LogProtocol static method) (cbclib.ScanSetup static method) Streaks (class in cbclib) subtract_background() (in module cbclib.bin) T tilt_angles() (in module cbclib.bin) tilt_matrix() (in module cbclib.bin) tilt_rotation() (cbclib.ScanSetup method) tilt_samples() (cbclib.ScanSetup method) to_dataframe() (cbclib.LSDetector method) (cbclib.ModelDetector method) (cbclib.Sample method) (cbclib.ScanSamples method) (cbclib.Streaks method) to_dict() (cbclib.FourierIndexer method) (cbclib.Map3D method) (cbclib.Sample method) (cbclib.ScanSamples method) to_euler() (cbclib.Rotation method) to_ini() (cbclib.Basis method) (cbclib.CXIProtocol method) (cbclib.LogProtocol method) (cbclib.ScanSetup method) to_lines() (cbclib.Streaks method) to_spherical() (cbclib.Basis method) to_tilt() (cbclib.Rotation method) train() (cbclib.IntensityScaler method) Transform (class in cbclib) U unmerge_hkl() (cbclib.IntensityScaler method) unmerge_signal() (in module cbclib.bin) update_arrays() (cbclib.bin.FFTW method) update_background() (cbclib.CrystData method) update_cor_data() (cbclib.CrystData method) update_crop() (cbclib.CBCTable method) update_indices() (cbclib.CXIStore method) update_lsd() (cbclib.LSDetector method) update_mask() (cbclib.CrystData method) update_output_file() (cbclib.CrystData method) update_patterns() (cbclib.LSDetector method) (cbclib.ModelDetector method) update_table() (cbclib.IntensityScaler method) update_transform() (cbclib.CrystData method) update_whitefield() (cbclib.CrystData method) update_xtal() (cbclib.IntensityScaler method) V values() (cbclib.Basis method) (cbclib.ComposeTransforms method) (cbclib.Crop method) (cbclib.CrystData method) (cbclib.CXIProtocol method) (cbclib.CXIStore method) (cbclib.Downscale method) (cbclib.IntensityScaler method) (cbclib.LogContainer method) (cbclib.LogProtocol method) (cbclib.LSDetector method) (cbclib.Mirror method) (cbclib.ModelDetector method) (cbclib.Rotation method) (cbclib.ScanSamples method) (cbclib.ScanSetup method) (cbclib.Streaks method) (cbclib.Transform method) W white_tophat() (cbclib.FourierIndexer method) Z zeros_aligned() (in module cbclib.bin)